
Arrival day
Penguins first
Fly into Punta Arenas
- NightPunta Arenas
- ThenBus to Natales
- ParkAfter the penguins
Checklist to tick off
Magdalena and Marta islands penguin trip from Punta Arenas
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The quick take
A Magdalena Island penguin tour from Puerto Natales means travelling to Punta Arenas first, about 3 hours by bus, and ideally sleeping there before the boat.
Route essentials
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All set. Only one thing left: choose the morning you sail out to the penguins.
Book your seatThe penguin boats sail from Punta Arenas, a long drive south of Puerto Natales. Here is how to fit Magdalena into a Patagonia trip built around Torres del Paine without wasting a day.
Editorial team, magdalenaislandtour.com · Updated November 12, 2026 · Reading: 7 min
Key facts
Yes, but not as a short outing from your hotel. The boats to Magdalena Island sail from Punta Arenas, from the Prat and Tres Puentes piers or, for our trip, from Bahia Laredo north of the city.1,5 The islands lie 35 km northeast of Punta Arenas, and CONAF only allows visits on tourist boats that sail from there.6,7
Puerto Natales, the base for Torres del Paine, is 250 km away along Route 9, a trip of about 3 hours by intercity bus.2 That distance turns a 5-hour boat trip to Isla Magdalena in Patagonia into a long day or a short overnight. No Magdalena trip we found begins in Natales, which turns the planning into a transport puzzle: reaching Punta Arenas before the boat does.
The good news is that Punta Arenas is hard to avoid on a Patagonia route. Chile Travel describes its airport as operating normally year-round with daily flights from Santiago.3 Plan the penguins for the day you arrive in or leave from Punta Arenas, and the detour almost disappears. Below we arrange the nights so the bus, the boat and your flights fit together.
Route 9 links Natales and Punta Arenas across the steppe. Chile Travel gives the distance as 250 km and the journey as 3 hours, by intercity bus or rental car on a paved road.2,3 Buses are the main regional link, and in summer demand is high, so Chile Travel advises buying tickets or reserving a car early.9,10 Keep the ticket on your phone, and arrive at the terminal with time to spare for luggage.
A private car is the flexible option if you are a group; ask whether it also runs from Natales. A private transfer listed from Punta Arenas to Natales takes 3 hours, costs from $422 for everyone in it, and comes with a driver who speaks Spanish. Divided among friends the cost per head falls, and the car waits for no timetable. Book it early too, since the operator does not guarantee a seat for bookings made less than 24 hours before arrival.
Driving yourself adds freedom and a few risks. The road crosses open country with long gaps between services, so leave Natales with a full tank and plenty of time. Chile Travel warns that distances in Patagonia are long and that the wind can slow road journeys considerably.11 Avoid a tight connection between the road and a boat.
Several Magdalena listings name morning sailings, and those are the slots that fill a day most neatly. One sets its meeting for 6AM or 7AM on Muelle Prat (its fields disagree), and ours expects you at the Jose Nogueira office 10 minutes before departure. Add 3 hours on the road from Natales and an early sailing becomes a pre-dawn departure from your hotel there.2
An afternoon slot looks easier on paper. The same listing names a 12:30PM or 1:30PM meeting, which a morning bus from Natales could in theory reach. In practice, a bus delay, a slow check-in or a cancellation for wind would cost you the boat, and you would face the drive back to Natales the same evening with nothing to show for it.
That is why we suggest building Magdalena around a night in Punta Arenas rather than a same-day round trip from Natales. The extra night costs less than a wasted day, and it gives you the morning slots, which leave later slots open if the wind keeps the first boat in port. It also lets you walk to the office instead of racing a bus timetable in the dark.
Your route
Start from where you land and where you fly home from.
If I fly into Punta Arenas
Penguins first
Sail the morning after you land, then take the bus north.2
If I fly out of Punta Arenas
Penguins last
Sail the morning before an evening flight; the airport is 20 km away.8
If I use the Natales airfield
Check its dates
It has scheduled closures from 1 January to 31 March 2027.13
If I travel as a group of friends
Price a private car
A private transfer starts from $422 per group.
If I have no spare day at all
Choose carefully
A same-day trip from Natales means 3 hours each way on the road.2
Route options

Arrival day
Fly into Punta Arenas

Departure day
Fly out of Punta Arenas

One base
Torres as a long day
Arrive in Punta Arenas in the afternoon, by bus from Natales or by plane, check in near the centre and walk to the office the next morning. Our trip finishes at the Plaza de Armas after about 5 hours, so you are back in the middle of town for lunch. The afternoon is free for the bus north or a flight home.
A night in town also turns the penguins into a stress-free outing. If the morning boat is cancelled, you can ask about a later departure or try again the next day, which is hardly possible on a same-day trip from Natales. Our booking asks for no money up front, and the seat can be released at no cost until the eve of the trip, which leaves it free to wait for the rest of the plan.
If your plans do slip, keep your nerve. Chile Travel notes that the weather in this region is unpredictable and windy, and that the wind is a constant factor that can change conditions within minutes.14,15 Slack in the route is what turns a bad forecast into a minor change of plan. Put the hard deadlines, like flights, at the ends of the trip, and keep the boat in the middle where it can move.
Natales, then the city
Afternoon
Route 9 to Punta Arenas takes about 3 hours.2
Evening
Stay near the centre, close to the office.
Next morning
Arrive 10 minutes before the start.
On the water
The boat and island trip lasts about 5 hours.
Lunchtime
The coach ends at the Plaza de Armas.
Afternoon
A 20 km ride north takes you to the airport.8
Flights from Santiago land at Punta Arenas after about 3.5 hours, at a terminal 20 km north of town with shuttles, taxis and rental desks.8 Puerto Natales has its own airfield, 15 minutes from the centre, with direct seasonal flights from Santiago.16 Which airport you use changes the best order for the penguins.
The Natales airfield has a timetable to watch next summer. Chile Travel reports scheduled closures from 1 January to 31 March 2027, with commercial flights mainly at weekends, except from 1 to 10 January when it runs normally.13 If your dates fall in that window, flying in or out of Punta Arenas is the reliable choice, and Magdalena fits neatly beside the airport.
For a flight out of Punta Arenas, sail on the morning of the day before, or on the morning of your flight if it leaves in the evening. Leave your bags at the hotel, take the trip, collect them and head north to the airport. Avoid a midday flight after a morning boat: the trip depends on the weather, and a delayed return leaves no margin.
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If you are coming from Punta Arenas (PUQ), you must travel 250 km along Route 9, a journey that lasts 3 hours. You can take an intercity bus to make the journey.
The park gate of Torres del Paine lies 80 km beyond Puerto Natales, close enough to make the town a natural base for the park.12 The simplest loop flies into Punta Arenas, sails to Magdalena the next morning, takes the afternoon bus to Natales and spends the following days in the park. The reverse works just as well if you fly home from Punta Arenas.
If you are short of time, a long day from Punta Arenas to the park is possible: one listing runs 16 hours with 3 hours in a van on the way out and 4.5 hours guided inside the park, from $106. It is a tiring way to see Torres, but it lets you keep Punta Arenas as your only base and add Magdalena on another day.
Whatever the order, put the penguins on a day with slack behind it. The park days are set by your hiking plans and the weather in the mountains; Magdalena is set by the wind on the strait. Keeping them on separate days, with a night in Punta Arenas between, is the plan that survives a bad forecast. Neither experience is worth rushing, and both reward a calm day on which to enjoy them.
Torres del Paine gives you granite towers and glaciers; the island gives you a colony of Magellanic penguins that you walk through on a roped trail.17 CONAF counts about 7,000 nesting pairs on the island, and Chile Travel speaks of more than 120,000 Magellanic penguins.18,19 It is a close and easy wildlife encounter to set beside the hiking.
The Magdalena Island penguins of Patagonia share the same summer as the trekking season. The park admits boats from mid-October to the end of March, and the tourism board names October to March as the prime penguin months.4,20 A trip planned for the park in those months can take in the penguins with one extra night.
The cost is modest next to the rest of a Patagonia budget. For $160 upwards you get 5 hours on the water and the island with a bilingual guide. Add a bus ticket and a night in Punta Arenas, and you have swapped a day of travel for a morning you will remember long after the hike. Holding a seat early costs nothing either, since cancelling stays free until the day before.
FAQ
You face 3 hours each way on the road around a trip of 5 hours that depends on the weather.2
One runs from Punta Arenas to Natales: 3 hours, from $422 for the whole party.
The Natales airfield has scheduled closures from 1 January to 31 March 2027, mainly opening at weekends.13
Chile Travel gives that distance from Puerto Natales to the entrance of the national park.12
This season's window for boats opens on 15 October 2026 and shuts after 31 March 2027.4
Sources
Further reading
Penguins in the Strait of Magellan? Ask a real person.